As discussed we'd like to support QuantMS as an external data source in ReactomeGSA.
The data we'd need in the end / internally is protein-level quant values per sample, such as:
| Sample |
Protein 1 |
Protein 2 |
... |
| Sample 1 |
10 |
15 |
... |
| Sample 2 |
5 |
12.5 |
... |
Additionally, we'd need the metadata in some structured format, internally this is then also stored as a simple table:
| Sample |
Sex |
Disease |
Tissue |
| Sample 1 |
M |
Control |
Skin |
| Sample 2 |
F |
Psoriasis |
Skin |
As discussed we'd like to support QuantMS as an external data source in ReactomeGSA.
The data we'd need in the end / internally is protein-level quant values per sample, such as:
Additionally, we'd need the metadata in some structured format, internally this is then also stored as a simple table: