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1. nextflow nextflow Public

   nextflow RNAseq pipeline for GG02

   Nextflow 1 1

2. atac atac Public

   nextflow ATACseq pipeline for GG02

   Nextflow 1

3. deseq2-explorer deseq2-explorer Public

   A full stack web app for differential expression analysis, powered by DESeq2. Upload a count matrix, define experimental contrasts, and explore results through interactive visualizations — all in t…

   JavaScript 1

4. scRNA-WS24 scRNA-WS24 Public

   Exercises for scRNA-seq Workshop TREX x BioHPC 2024.

   Jupyter Notebook 1 2

5. qcCheckeR qcCheckeR Public

   A Shiny application for quality control and exploratory analysis of RNA-Seq data. QC-CheckeR provides an interactive interface for metadata editing, sample management, and PCA visualization using D…

   R 1

6. sartools sartools Public

   Nextflow Pipeline for SAR_tools

   R