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Pull requests: nf-core/modules

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197 Open 7,917 Closed
197 Open 7,917 Closed
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Pull requests list

new module: vcf2zarr/explode
#11092 opened Mar 30, 2026 by camlloyd Loading…
12 of 17 tasks
1
Add caalm size/l
#11087 opened Mar 30, 2026 by vagkaratzas Loading…
12 of 17 tasks
2
Bump delly call
#11080 opened Mar 27, 2026 by bagnacan Loading…
4 tasks done
3
feat: civicpy/annotate module
#11079 opened Mar 27, 2026 by emmcauley Loading…
5 of 17 tasks
1
1
Update GNU sort to comply to nf-core guidelines Ready for Review
#11072 opened Mar 27, 2026 by mahesh-panchal Loading…
1 of 17 tasks
1
add batch testing
#11071 opened Mar 27, 2026 by mashehu Loading…
Update merqury build number (addresses a bug)
#11070 opened Mar 27, 2026 by CormacKinsella Loading…
1 task done
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal • Draft
2 of 17 tasks
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Loading…
12 of 17 tasks
10
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
Anarcii
#11058 opened Mar 26, 2026 by Clara0611 Loading…
12 of 14 tasks
1
4
split outputs size/s
#11054 opened Mar 26, 2026 by suzannejin • Draft
17 tasks
5
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Loading…
13 of 17 tasks
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Loading…
17 tasks
1
Masurca container-issue help wanted Extra attention is needed
#11049 opened Mar 25, 2026 by LiaOb21 • Draft
17 tasks
1
10
Update module ctree Ready for Review
#11043 opened Mar 25, 2026 by valerianilucrezia Loading…
5 tasks done
1
Update pairtools to 1.1.3 and migrating to topic version
#11039 opened Mar 25, 2026 by birkiy Loading…
9
Big slice imp modules
#11034 opened Mar 24, 2026 by SkyLexS Loading…
9 of 14 tasks
2
Update to topics chromap/chromap
#11025 opened Mar 23, 2026 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
2
New module: exomiser/analyse size/m
#11023 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
16
add fgumi sort/zipper modules size/m
#11017 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
1
UNZIP: modernize to latest nf-core conventions
#11014 opened Mar 22, 2026 by maxcumminsandfred-lab Loading…
10 of 14 tasks
1
Add module for Circlator (all) new module Adding a new module
#11013 opened Mar 22, 2026 by cwoodside1278 Loading…
11 of 14 tasks
1
@cwoodside1278
Add module bolt/reml
#11011 opened Mar 22, 2026 by lyh970817 • Draft
14 tasks done
Add regenie/step2 module
#11009 opened Mar 21, 2026 by lyh970817 Loading…
14 tasks done
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