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1. danaSeq danaSeq Public

   Analysis Pipeline and Dashboard for Environmental Metagenomics

   Svelte 1 1

2. open-community-science/omc-platform open-community-science/omc-platform Public

   OMC Platform - AI-assisted scientific publishing for microbial ecology

   Python 1

3. papa2 papa2 Public

   Python-first amplicon denoising — byte-identical to R's DADA2

   Python 2

4. microscape-nf microscape-nf Public

   Microscape amplicon sequencing pipeline (Nextflow)

   R

5. nclb nclb Public

   No Contig Left Behind — animist MAG bin refinement for metagenome-assembled genomes

   Python