The rDNA 2 dGPU support patch kext. No commercial use.

Utilities for accessing AMD's Machine-Readable GPU ISA Specifications.

RadeonTuner is an easy to use alternative for the AMD Adrenalin Software for users that just want the basics or use the driver only install type.

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

A working Comfy UI with AMD GPUs. Works with RDNA 3/3.5/4

Human and mouse genome assemblies customized for rDNA mapping

This repository contains 18S reference sets that can be used with the RDP Classifier to classify 18S rDNA metabarcode sequences.

A machine learning pipeline for comparative analysis of 45S rRNA genes from plant NOR regions

Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.

Deploy AI Models On Any Hardware Train, fine-tune, convert, quantize, serve, and benchmark models for NPU, TPU, GPU, and CPU. One toolkit — every accelerator. OpenAI-compatible API included.

Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.

Dirks et al. (2026), "Rediscovery of the tardigrade pathogen Sorochytrium milnesiophthora, a blastoclad boasting the longest-known fungal internal transcribed spacer"

OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR…

This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).

Using computational methods in genomics to study disease association in human rDNA

This pipeline performs annotation of rDNA FASTA sequences using Ribotyper and BLASTN. It generates both tabular and interactive HTML reports that combine classification results and best-hit BLAST alignments for each sequence.

RDNA-native LLM inference engine in Rust. 59 tok/s Qwen3-8B on RX 5700 XT — 1.34x faster than llama.cpp. Custom 4-bit quantization, quantized KV cache, batched prefill. No Python, no link-time ROCm dependency.

Collection of miscellaneous resources