Add base qualities for unaligned sequences in GAF output#88
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Archieyoung wants to merge 1 commit intovgteam:masterfrom
Open
Add base qualities for unaligned sequences in GAF output#88Archieyoung wants to merge 1 commit intovgteam:masterfrom
Archieyoung wants to merge 1 commit intovgteam:masterfrom
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Description
This PR ensures that base quality strings (QUAL) are preserved and included when writing unaligned sequences to GAF (Graph Alignment Format) file.
Motivation
Preserving sequence data integrity. Quality scores are critical for downstream variant calling, error correction, and filtering. Dropping these scores for unaligned reads makes it impossible to re-evaluate those sequences later without referring back to the original raw files.